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Genomic DNA (gDNA) from human tissues and cell lines was isolated and converted using the EZ DNA Methylation Kit (D5001; Zymo Research, Irvine, CA). The methylation status of the SOX7 promoter in these gDNA samples was determined by methylation-specific PCR according to a published procedure. 10 PCR was performed using RGFP966 Taq Polymerase (Zymo Research) under the following parameters: 95��C for 10 minutes; 35 cycles of 95��C for 30 seconds, 54��C or 58��C for 30 seconds, and 72��C for 30 seconds; and 72��C for 7 minutes. To study the effects of methyltransferase inhibition on SOX7 mRNA levels in MCF-7 and MDA-MB-231 cells, we treated cells with 1 ��mol/L 5-aza-2��-deoxycytidine for 72 hours. Other drugs used to determine the effects of inhibiting histone deacetylase or histone methyltransferase activity included 3-mercaptopyruvate sulfurtransferase 400 nmol/L Trichostatin A (TSA) for 24 hours and 3 ��mol/L BIX01294 for 72 hours, respectively. Total cellular RNA was extracted using the TRIzol protocol (Invitrogen) and subsequently analyzed by quantitative RT-PCR (RT-qPCR). SOX7 mRNA levels were determined using 1 ��g of RNA that was incubated with 0.5 ��g/��L of oligo dT primer (Promega Corp., Madison, WI) at 70��C for 5 minutes. Meanwhile, we prepared the reverse transcription mix and left it at room temperature until the annealing step was complete. The reverse transcription mix was immediately added and incubated at 40��C for 1 hour: 5 ��L of 5�� Moloney murine leukemia virus buffer, 5 ��L of 10 mmol/L deoxyribonucleotide triphosphate, 0.6 ��L of ribonuclease inhibitor (RNasin; Promega Corp.), 1 ��L of reverse transcriptase, and 13.4 ��L of nuclease-free water. Quantitative PCR analysis using Taqman gene expression arrays was then performed for SOX7 expression, and data were normalized to GAPDH levels and determined by the ����CT method (Applied Biosystems Inc., Foster City, CA).28 All analyses were performed using the ABI7000 Sequence Detection System (Applied Biosystems). Experiments were performed as described previously.29 To test the effects of various mutations on SOX7 protein stability, we infected MDA-MB-231 cells with lentivirus expressing the pSL5 vector or check details pSL5/SOX7. Cells were treated with 60 ��g/mL of cycloheximide for the indicated time points. Lysates were collected and analyzed by Western blot. Data in RT-qPCR, invasion, WST-1, and xenograft assays are indicated as means �� SD. Comparisons between two groups for a single parameter were performed using Student's t-test. All analyses were performed using commercially available software (SigmaPlot version 11.0; Systat Software Inc., San Jose, CA; and Microsoft Excel 2010; Microsoft, Redmond, WA). A difference was considered statistically significant at P